论文专著(#第一作者，*通讯作者，近5年)：

1. Tingting Hao^#, Hua Su^#, Zijing Quan^#, Ruixin Zhang, Minjie Yu, Jiahui Xu, Jia Li, Song Li, Alan Warren, Saleh A. Al‑Farraj, Zhenzhen Yi^*, 2025. Distinct evolutionary origins and mixed-mode transmissions of methanogenic endosymbionts are revealed in anaerobic ciliated protists. Marine Life Science & Technology, in press.（大类一区Top）

2. Jiahui Xu^#, Zhuo Shen^#, Tingting Hao, Hua Su, Miaoying Chen, Xuming Pan^*, Zhenzhen Yi^* 2025. Exploring the evolution of anaerobes within ciliate class Prostomatea by transcriptomics. Molecular Phylogenetics and Evolution, 207:108345.（大类一区Top）

3. Hua Su, Tingting Hao, Minjie Yu, Wuyu Zhou, Lei Wu, Yalan Sheng, Zhenzhen Yi^*, 2024. Complex evolutionary patterns within the tubulin gene family of ciliates, unicellular eukaryotes with diverse microtubular structures. BMC Biology, 22:170.（大类二区Top）

4. Hua Su, Jihui Xu, Jia Li, Zhenzhen Yi^*, 2023. Four ciliate-specific expansion events occurred during actin gene family evolution of eukaryotes. Molecular Phylogenetics and Evolution, 184:107789.（大类一区Top）

5. Jia Li^#, Song Li^#, Hua Su, Minjie Yu, Jiahui Xu, Zhenzhen Yi^*, 2023. Comprehensive phylogenomic analyses reveal that order Armophorida is most closely related to class Armophorea (Protista, Ciliophora). Molecular Phylogenetics and Evolution, 182:107737.（大类一区Top）

6. Jiahui Xu, Zhuo Shen, Minjie Yu, Yalan Sheng^*, Zhenzhen Yi^*, 2023. Novel insights into molecular mechanisms of vegetative cell cycle and resting cyst formation in Apodileptus cf. visscheri (Alveolata, Ciliophora). Journal of Eukaryotic Microbiology, 70:e12958.

7. Zhicheng Chen^#, Jia Li^#, Dayana E. Salas-Leiva, Miaoying Chen, Shilong Chen, Senru Li, Yanyan Wu, Zhenzhen Yi^*, 2022. Group-specific functional patterns of mitochondrion-related organelles shed light on their multiple transitions from mitochondria in ciliated protists. Marine Life Science & Technology, 4: 609-623.（大类一区Top）

8. Tao Li^#, Mingjian Liu^#, Alan Warren, Saleh A. Al-Farraj, Zhenzhen Yi, Yalan Sheng^*, 2022. Morphology and SSU rRNA gene-based phylogeny of three peniculid ciliates (Ciliophora, Oligohymenophorea) from China, including a new Frontonia species. European Journal of Protistology, 85: 125910.

9. Jiahui Xu^#, Jianlin Han^#, Hua Su, Changyu Zhu, Zijing Quan, Lei Wu, Zhenzhen Yi^*, 2022. Diversity patterns of protists are highly affected by methods disentangling biological variants: a case study in oligotrich (s.l.) ciliates. Microorganisms, 10, 913.（大类二区）

10. Changyu Zhu^#, Weiwei Liu^#, Xinghao Li^#, Yusen Xu, Hamed A. El-Serehy, Saleh A. Al-Farraj, Honggang Ma, Thorsten Stoeck, Zhenzhen Yi^*, 2021. High salinity gradients and intermediate spatial scales shaped similar biogeographical and co-occurrence patterns of microeukaryotes in a tropical freshwater saltwater ecosystem. Environmental Microbiology, 23: 4778-4796.（大类二区）

11. Dayana E. Salas-Leiva^*, Eelco C. Tromer, Bruce A. Curtis, Jon Jerlström-Hultqvist, Martin Kolisko, Zhenzhen Yi, Joan S. Salas-Leiva, Lucie Gallot-Lavallée, Shelby K. Williams, Geert J. P. L. Kops, John M. Archibald, Alastair G. B. Simpson, Andrew J. Roger^*, 2021. Genomic analysis finds no evidence of canonical eukaryotic DNA processing complexes in a free-living protist. Nature Communications, 12:6003.（大类一区Top）

12. Lingyun Chen^#, Yongqiang Liu^#, Yongli Long^#, Jing Lyu, Chunyan Feng, Yingzhi Ning^*, Zhenzhen Yi^*, 2021. Morphology and molecular phylogeny of two new soil ciliates, Hemiurosomoida warreni nov. spec. and Hemiurosoma clampi nov. spec. (Ciliophora, Hypotrichia) from Tibet. European Journal of Protistology, 77:125746.

13. Jiahui Xu, Mark Wilkinson, Miaoying Chen, Qi Zhang, Ran Yang, Zhenzhen Yi^*, 2021. Concatenated data and dense taxon sampling clarify phylogeny and ecological transitions within Hypotricha. Zoologica Scripta, 50: 125-139.（大类二区）

14. Weiwei Liu, Mann Kyoon Shin, Zhenzhen Yi, Yehui Tan^*, 2021. Progress in studies on the diversity and distribution of planktonic ciliates (Protista, Ciliophora) in the South China Sea. Marine Life Science & Technology 3: 28-43.（大类一区Top）

15. Changyu Zhu, David Bass, Yutao Wang, Zhuo Shen, Weibo Song, Zhenzhen Yi^*, 2020. Environmental parameters and substrate type drive microeukaryotic community structure during short-term experimental colonization in subtropical eutrophic freshwaters. Frontiers in Microbiology, 11:555795.（大类二区）

16. Qi Zhang^#, Jiahui Xu^#, Alan Warren, Ran Yang, Zhuo Shen*, Zhenzhen Yi^*, 2020. Assessing the utility of Hsp90 gene for inferring evolutionary relationships within the ciliate subclass Hypotricha (Protista, Ciliophora). BMC Evolutionary Biology, 20: 86.

17. Yiwei Xu^#, Zhuo Shen^#, Eleni Gentekaki, Jiahui Xu, Zhenzhen Yi^*, 2020. Comparative transcriptome analyses during the vegetative cell cycle in the mono-cellular organism Pseudokeronopsis erythrina (Alveolata, Ciliophora). Microorganisms, 8: 108.（大类二区）

18. Kaihui Lu, Weiwei Liu, Alan Warren, Yusen Xu, Changyu Zhu, Yan Zhao, Zhenzhen Yi^*, 2020. Diversity of oligotrich ciliates (Ciliophora, Spirotrichea) in the northern coast of South China Sea as revealed in LSU rDNA sequences. Journal of Oceanology and Limnology, 38: 156-167.（大类二区）

19. Mingjian Liu^#, Lifang Li^#, Tengteng Zhang, Xinpeng Fan, Zhenzhen Yi^*, Xiaofeng Lin^*, 2020. Two new scuticociliates from southern China: Uronema apomarinum sp. nov. and Homalogastra parasetosa sp. nov., with improved diagnoses of the genus Homalogastra and its type species Homalogastra setosa (Ciliophora, Oligohymenophorea). International Journal of Systematic and Evolutionary Microbiology, 70: 2405-2419.

20. 黄颖滢、袁洪玉、伊珍珍^*，2025. 基于科学突破奖的“基因表达与性状的关系”STS教学设计. 生物学通报，已接受.

21. 袁洪玉、黄颖滢、伊珍珍^*，2025. 学科前沿融入“生物有共同祖先的证据”科学本质教学设计. 生物学通报，已接受.

22. 邱庆红、袁洪玉、林媛、伊珍珍^*，2025. 融入学科前沿的“从种到界”STSE教学设计. 中学生物学，已接受.

23. 袁洪玉、李展贤、林媛、伊珍珍^*，2024. 基于鳄雀鳝议题的“生态系统的稳定性”SSI教学设计. 生物学通报，59：33-37.

24. 李展贤、周宸晨、李德红、伊珍珍^*，2023. 基于学科前沿提高学生核心素养的教学设计—以“光合作用的原理和应用”为例. 生物学通报，58：31-34.